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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_27426_28806_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
27426 - 28806
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCTAATTGG
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCCTCCTGACTT
Flanking Amino Acid:
LGFRAPVRELVFPCGPEARE
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.3
49.3
46.5
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
84.5
0.78
0.7
77.5
31.3
Minor 5ss
25.1
-2.9
3.6
29.5
37.9
Minor BPS
49.7
0.06
1.8
63.83
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014336
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014929
27329 - 29735
2407