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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_28241_28806_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
28241 - 28806
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCTAATTAA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCCTCCTGACTT
Flanking Amino Acid:
LSGWSFHVNSLFPCGPEARE
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.5
58.6
36.6
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
84.5
0.78
0.7
77.5
31.3
Minor 5ss
27.3
-2.6
3.8
36.9
40.7
Minor BPS
49.7
0.06
1.8
63.83
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014336
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034288
28111 - 29735
1625