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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_61641_61991_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61641 - 61991
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
TTTAGGTTAATA
Flanking Amino Acid:
RAAEKKYGTNKAEMVVPEFL
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
78.1
0.63
0.9
69.8
40.6
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
49.8
-0
2.4
71.67
41

Associated Gene:

Gene:
ATP13A1
Ensembl Gene ID:
ENSAPLG00000013387
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013992
59681 - 75078
15398