Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_62065_62361_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62065 - 62361

Intron Length:

297

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAGAA

U12 Branch Point Sequence:

ATTAGAACAACA

Flanking Amino Acid:

RATAPFFVFQVFCVGLWCLD

Intron Amino Acid Position:

400

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

71.1

35.5

Major BPS

61.2

0.28

58.8

38.1

Major PPT

0.83

0.7

81.7

23.1

Minor 5ss

36.7

-1.5

3.1

47.8

47.6

Minor BPS

40.4

-0.7

2.2

57.6

Associated Gene:

Gene:

ATP13A1

Ensembl Gene ID:

ENSAPLG00000013387

Chromosome:

PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013992

59681 - 75078

15398