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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_62980_63589_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62980 - 63589
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGACT
5'SS Class:
major
3'SS Sequence:
GTATTAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTGTATTAATT
Flanking Amino Acid:
EIIPGDIVSIGRSPHENLVP
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.7
39
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.4
0.55
1
67.4
42.5
Minor 5ss
35.1
-1.7
3.2
47.1
42.5
Minor BPS
59.3
0.37
1.7
76.06
41.3

Associated Gene:

Gene:
ATP13A1
Ensembl Gene ID:
ENSAPLG00000013387
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013992
59681 - 75078
15398