Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_65926_66413_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65926 - 66413

Intron Length:

488

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

TGCTCTCTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

TGTCACAGACTT

Flanking Amino Acid:

NTSLIALAKLYVYCTEPFRI

Intron Amino Acid Position:

661

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

73.6

35.1

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

77.5

0.62

0.8

69.7

36.7

Minor 5ss

39.6

-1.2

2.7

53.3

37.4

Minor BPS

41.4

-0.5

61.6

41.7

Associated Gene:

Gene:

ATP13A1

Ensembl Gene ID:

ENSAPLG00000013387

Chromosome:

PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013992

59681 - 75078

15398