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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_66535_67162_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66535 - 67162
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTCTCTTTTATG
Flanking Amino Acid:
HLVVRGVAGLRDGKEVTPVS
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.6
0.64
0.9
73.5
36.7
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
55.7
0.03
1.7
59.5
42.8

Associated Gene:

Gene:
ATP13A1
Ensembl Gene ID:
ENSAPLG00000013387
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013992
59681 - 75078
15398