About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_67321_68080_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67321 - 68080
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATTTCCTGATCT
Flanking Amino Acid:
LMAVDWTLTKDEKVFPRSIK
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
69.3
0.68
1.7
87.75
37.2

Associated Gene:

Gene:
ATP13A1
Ensembl Gene ID:
ENSAPLG00000013387
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013992
59681 - 75078
15398