Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_69308_69637_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

69308 - 69637

Intron Length:

330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGCATC

5'SS Class:

major

3'SS Sequence:

GCTTTCCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TCATTTTGACCT

Flanking Amino Acid:

IREIQNASHHVVMITGDNPL

Intron Amino Acid Position:

892

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

1.3

76.2

39.9

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

81.3

0.7

0.8

77.8

31.1

Minor 5ss

45.3

-0.5

2.8

60.4

37.5

Minor BPS

50.3

0.09

1.7

68.65

42.6

Associated Gene:

Gene:

ATP13A1

Ensembl Gene ID:

ENSAPLG00000013387

Chromosome:

PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013992

59681 - 75078

15398