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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_74126_74473_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74126 - 74473
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
GGCTAATCACTT
Flanking Amino Acid:
QFGLVEIPTEFKIVITEVLL
Intron Amino Acid Position:
1325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
70.5
0.51
1
72
33.1
Major PPT
76.8
0.6
0.9
69.4
41.7
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
39.2
-0.7
2
52.06
42.3

Associated Gene:

Gene:
ATP13A1
Ensembl Gene ID:
ENSAPLG00000013387
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013992
59681 - 75078
15398