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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_83856_84259_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83856 - 84259
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGCGC
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTCCTAAATT
Flanking Amino Acid:
SLPPFHQDVTELCQSISLDL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
53.3
43.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
31.3
-2.1
3.3
39.2
41.3
Minor BPS
74.7
0.85
1.6
88.65
36.5

Associated Gene:

Gene:
DSN1
Ensembl Gene ID:
ENSAPLG00000012996
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036518
81964 - 86443
4480
ENSAPLT00000017281
81964 - 86443
4480
ENSAPLT00000013539
81964 - 85984
4021