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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_84518_84853_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84518 - 84853
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
GTGATTTTGAGT
Flanking Amino Acid:
PVPVRGDAAGEPDPGEKKGD
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.9
35.3
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
81.9
0.72
0.9
80.5
37
Minor 5ss
33.5
-1.9
3.4
47.6
48
Minor BPS
48.5
-0
1.6
63.32
41.5

Associated Gene:

Gene:
DSN1
Ensembl Gene ID:
ENSAPLG00000012996
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036518
81964 - 86443
4480