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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_85985_86356_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85985 - 86356
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTACCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTGTTTTACCT
Flanking Amino Acid:
NPLYTTQRIDANGSWQDATT
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
77.2
31.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82.2
0.73
0.8
78.8
34.8
Minor 5ss
43
-0.8
3.1
62.5
41.8
Minor BPS
63.6
0.5
1.7
82.56
39.6

Associated Gene:

Gene:
PBX4
Ensembl Gene ID:
ENSAPLG00000012834
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013379
85165 - 96167
11003
Gene:
DSN1
Ensembl Gene ID:
ENSAPLG00000012996
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036518
81964 - 86443
4480
ENSAPLT00000017281
81964 - 86443
4480