About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_86444_87057_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86444 - 87057
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTGTTATTC
Flanking Amino Acid:
SPVGGNVQSQMDSLHHVIHQ
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74
0.54
0.9
68.1
37.6
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
48.6
-0.1
2.2
65.04
41.6

Associated Gene:

Gene:
PBX4
Ensembl Gene ID:
ENSAPLG00000012834
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013379
85165 - 96167
11003