Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_87514_87764_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87514 - 87764

Intron Length:

251

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAAGG

5'SS Class:

strong_major

3'SS Sequence:

TATATGTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCAAAT

U12 Branch Point Sequence:

ATTAGTTCAATC

Flanking Amino Acid:

AKKGGITVSQVSNWFGNKRI

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

68.1

42.8

Major BPS

68.5

0.46

73.3

28.9

Major PPT

0.58

66.3

44.8

Minor 5ss

-1.2

2.8

46.8

Minor BPS

47.9

-0.1

1.9

61.49

38.3

Associated Gene:

Gene:

PBX4

Ensembl Gene ID:

ENSAPLG00000012834

Chromosome:

PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013379

85165 - 96167

11003