Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_87901_88214_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87901 - 88214

Intron Length:

314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGTGA

5'SS Class:

major

3'SS Sequence:

GCTCTTTTGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAATAAT

U12 Branch Point Sequence:

GCTCTTTTGATA

Flanking Amino Acid:

MILRSRFLDARRKRRNFSKQ

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.45

1.1

59.6

41.8

Major BPS

62.3

0.31

1.3

64.3

39.7

Major PPT

0.47

68.1

37.6

Minor 5ss

35.1

-1.7

3.4

47.8

47.7

Minor BPS

54.8

0.14

1.2

59.2

34.7

Associated Gene:

Gene:

PBX4

Ensembl Gene ID:

ENSAPLG00000012834

Chromosome:

PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013379

85165 - 96167

11003