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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_88406_88764_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88406 - 88764
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCTTT
5'SS Class:
major
3'SS Sequence:
TATTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATTT
Flanking Amino Acid:
YHSELEKYEQACSEFTTHVM
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88
0.85
0.8
85.7
33.4
Minor 5ss
44.4
-0.6
3.1
64.6
46.7
Minor BPS
53.1
0.18
1.7
70.85
40.8

Associated Gene:

Gene:
PBX4
Ensembl Gene ID:
ENSAPLG00000012834
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013379
85165 - 96167
11003