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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012260.1_95716_96153_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95716 - 96153
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGCTGCT
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTCTTTCATT
Flanking Amino Acid:
MFLIRKHALNCHRM
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
65.8
40.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
34
-1.8
3.5
49.9
46.5
Minor BPS
67.7
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
PBX4
Ensembl Gene ID:
ENSAPLG00000012834
Chromosome:
PEDO01012260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013379
85165 - 96167
11003