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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012266.1_774_934_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
774 - 934
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTTTCTCCATC
Flanking Amino Acid:
AGERLQDARAAPAAASPAVP
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
75.4
0.57
0.9
66.7
39.7
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
50
-0
2
65.51
41

Associated Gene:

Gene:
CCN5
Ensembl Gene ID:
ENSAPLG00000020878
Chromosome:
PEDO01012266.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026376
21 - 2757
2737