Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012348.1_2450_2629_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2450 - 2629

Intron Length:

180

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCGCCA

5'SS Class:

major

3'SS Sequence:

TGTCCTGCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

GCCGGCTGATGT

Flanking Amino Acid:

MGQCDFLDRPAPESLMQALE

Intron Amino Acid Position:

381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.6

0.34

1.3

54.1

44.7

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

70.5

0.46

0.9

61.6

Minor 5ss

35.2

-1.7

3.5

48.2

47.5

Minor BPS

35.5

-1

2.1

44.48

46.2

Associated Gene:

Gene:

DQX1

Ensembl Gene ID:

ENSAPLG00000030009

Chromosome:

PEDO01012348.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045166

204 - 4079

3876

ENSAPLT00000040377

204 - 6109

5906