Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012348.1_3387_3637_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3387 - 3637

Intron Length:

251

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGCTG

5'SS Class:

major

3'SS Sequence:

CTGTCCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCATCAC

U12 Branch Point Sequence:

TGGAGCATCACT

Flanking Amino Acid:

HILLFLASEQEITECCGAIQ

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

60.4

45.8

Major BPS

49.2

-0

1.3

53.6

41.6

Major PPT

74.9

0.56

0.8

69.3

31.3

Minor 5ss

27.5

-2.6

3.5

37.1

47.5

Minor BPS

42.4

-0.5

2.3

62.34

Associated Gene:

Gene:

DQX1

Ensembl Gene ID:

ENSAPLG00000030009

Chromosome:

PEDO01012348.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040377

204 - 6109

5906