Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012348.1_4500_5939_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4500 - 5939

Intron Length:

1440

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

CCGCCCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCGAC

U12 Branch Point Sequence:

CAGGCCCCGACC

Flanking Amino Acid:

GPPGTGKSTQVPQWCAEYAL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

43.6

-0.4

1.2

35.4

32.1

Major PPT

67.8

0.4

0.8

60.8

29.2

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

42.5

-0.6

1.9

47.42

42.3

Associated Gene:

Gene:

DQX1

Ensembl Gene ID:

ENSAPLG00000030009

Chromosome:

PEDO01012348.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040377

204 - 6109

5906