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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012359.1_856_1365_F

Intron Information:

Intron Rank:
134296
Intron Class:
major
Intron Phase:
Intron Coordinates:
856 - 1365
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGTAT
5'SS Class:
major
3'SS Sequence:
CTTCTTGCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTAGTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
66.9
41
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.9
0.61
0.8
69.5
36.8
Minor 5ss
44.4
-0.6
3.3
64.7
46.7
Minor BPS
62.6
0.47
2.2
84.76
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022180
Chromosome:
PEDO01012359.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041474
21 - 3168
3148