Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012376.1_2573_2647_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2573 - 2647

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

CCCTGCCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

GTGTGCTGACCC

Flanking Amino Acid:

QQQLNQFQHELQKSKEREEQ

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

66.3

0.4

1.1

41.8

Major PPT

72.6

0.51

0.8

65.1

30.7

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

46.6

-0.2

2.1

59.8

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020875

Chromosome:

PEDO01012376.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034200

1402 - 3419

2018