Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012390.1_3264_3966_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3264 - 3966

Intron Length:

703

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAACATAG

5'SS Class:

major

3'SS Sequence:

AGGGGGCCGGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGGGGAG

U12 Branch Point Sequence:

GGGGGGGGGAGG

Flanking Amino Acid:

PPPIFYQYSCSPRAGAAAPG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.2

59.5

42.3

Major BPS

30.1

-1.2

1.5

14.2

34.9

Major PPT

39.3

-0.6

1.6

28.3

37.6

Minor 5ss

32.5

-2

46.6

48.7

Minor BPS

19.6

-2.5

2.2

15.51

28.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027985

Chromosome:

PEDO01012390.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035928

3157 - 4552

1396