Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012407.1_1621_2291_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

1621 - 2291

Intron Length:

671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGTCCATA

5'SS Class:

weak_minor

3'SS Sequence:

CTGAGTCCAAGAG|G

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TTTCCAG

U12 Branch Point Sequence:

TTTTCCAGGACA

Flanking Amino Acid:

MHQMSNSSSI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.3

0.1

1.2

59.7

40.7

Major BPS

53.4

0.08

1.7

72.5

43.5

Major PPT

45.9

-0.2

1.7

47.1

40.4

Minor 5ss

55.6

0.19

2.4

69.7

41.4

Minor BPS

63.6

0.42

1.8

80.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030637

Chromosome:

PEDO01012407.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017981

1619 - 3258

1640