Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012415.1_3407_4100_R

Intron Information:

Intron Rank:

133141

Intron Class:

major

Intron Phase:

Intron Coordinates:

3407 - 4100

Intron Length:

694

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGATAC

5'SS Class:

strong_major

3'SS Sequence:

AAATCATTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

CTGCTTTTAAGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.8

77.3

26.4

Major BPS

71.6

0.54

33.1

Major PPT

70.1

0.45

59.5

45.2

Minor 5ss

32.8

-2

40.8

45.7

Minor BPS

48.9

-0.2

1.7

51.33

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018873

Chromosome:

PEDO01012415.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044925

2233 - 4245

2013