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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012416.1_2339_2448_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2339 - 2448
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
TGTTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
TGCCCCCTAACC
Flanking Amino Acid:
PKKRKKDPACGTQASGPLLA
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
73.2
37.4
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
72.3
0.5
0.9
62.7
39.7
Minor 5ss
36.7
-1.5
2.9
47
42.5
Minor BPS
60.9
0.32
1.7
70
40.9

Associated Gene:

Gene:
C2orf42
Ensembl Gene ID:
ENSAPLG00000009949
Chromosome:
PEDO01012416.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010352
21 - 6764
6744