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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012431.1_594_632_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
594 - 632
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGGGCG
5'SS Class:
weak_major
3'SS Sequence:
CGGGGTGGTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCGTGAG
U12 Branch Point Sequence:
CGGCGCGGGACG
Flanking Amino Acid:
LANKHQRTHLASWFGRGGTS
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.3
48.4
42.4
Major BPS
40.9
-0.5
1.7
30.7
44
Major PPT
43.2
-0.3
1.7
41.8
47.3
Minor 5ss
25
-2.9
3.3
25.3
37.1
Minor BPS
34
-1.4
2.2
33.02
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027570
Chromosome:
PEDO01012431.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046803
491 - 982
492