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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012432.1_12014_12091_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12014 - 12091
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCG
5'SS Class:
major
3'SS Sequence:
CGTTTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CCCCGCTGAGCC
Flanking Amino Acid:
GPRDGLQNEQSIVPTAVKIG
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
61.4
42.5
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
72.2
0.5
0.9
65.6
36.1
Minor 5ss
35.1
-1.7
3.5
47.6
48
Minor BPS
40.7
-0.7
2
44.11
43.8

Associated Gene:

Gene:
FUCA1
Ensembl Gene ID:
ENSAPLG00000005504
Chromosome:
PEDO01012432.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014032
6321 - 14827
8507
ENSAPLT00000005694
6321 - 12958
6638
ENSAPLT00000032804
6321 - 14827
8507
ENSAPLT00000031911
6321 - 14827
8507
ENSAPLT00000020133
10032 - 14827
4796