Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012432.1_12200_12593_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12200 - 12593

Intron Length:

394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

ACACCCTTAGAG

Flanking Amino Acid:

SFVSPRWVPQMADHTEVMQG

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

1.2

76.7

33.6

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

0.74

0.8

76.8

31.7

Minor 5ss

29.4

-2.4

2.9

36.5

40.5

Minor BPS

48.2

-0.2

1.8

49.91

43.3

Associated Gene:

Gene:

FUCA1

Ensembl Gene ID:

ENSAPLG00000005504

Chromosome:

PEDO01012432.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005694

6321 - 12958

6638

ENSAPLT00000032804

6321 - 14827

8507

ENSAPLT00000031911

6321 - 14827

8507

ENSAPLT00000020133

10032 - 14827

4796

ENSAPLT00000014032

6321 - 14827

8507