Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012432.1_12690_13080_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12690 - 13080

Intron Length:

391

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

CTCACGTTAATG

Flanking Amino Acid:

TPNLKGFQAAVAAGAKEVSI

Intron Amino Acid Position:

503

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

72.9

36.6

Major BPS

71.6

0.54

33.1

Major PPT

76.6

0.6

73.2

37.2

Minor 5ss

33.6

-1.9

3.5

49.7

46.1

Minor BPS

48.9

-0.2

2.2

55.31

46.4

Associated Gene:

Gene:

FUCA1

Ensembl Gene ID:

ENSAPLG00000005504

Chromosome:

PEDO01012432.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020133

10032 - 14827

4796

ENSAPLT00000014032

6321 - 14827

8507

ENSAPLT00000032804

6321 - 14827

8507

ENSAPLT00000031911

6321 - 14827

8507