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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012432.1_6671_7452_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6671 - 7452
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCGCC
5'SS Class:
major
3'SS Sequence:
TTCTATTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTTTCTATTC
Flanking Amino Acid:
WARLFQRAGASNIRYGLYHS
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
67.6
39.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.7
0.83
0.7
84.9
29.6
Minor 5ss
33
-1.9
3.2
42.8
44.3
Minor BPS
48.2
-0.1
1.8
62.91
37.1

Associated Gene:

Gene:
FUCA1
Ensembl Gene ID:
ENSAPLG00000005504
Chromosome:
PEDO01012432.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032804
6321 - 14827
8507