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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012432.1_7591_8259_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7591 - 8259
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCATTCTGAAGT
Flanking Amino Acid:
TMPELYDLVLKYKPDLIWSD
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.2
0.54
1
73.5
36.4
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
50.1
0.08
1.8
64.75
45.7

Associated Gene:

Gene:
FUCA1
Ensembl Gene ID:
ENSAPLG00000005504
Chromosome:
PEDO01012432.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032804
6321 - 14827
8507
ENSAPLT00000031911
6321 - 14827
8507
ENSAPLT00000014032
6321 - 14827
8507
ENSAPLT00000005694
6321 - 12958
6638