Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012432.1_8366_8592_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8366 - 8592

Intron Length:

227

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTTCTT

5'SS Class:

major

3'SS Sequence:

TTCCTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAACAT

U12 Branch Point Sequence:

TCCTGCTGAGTT

Flanking Amino Acid:

AWLYNDSPVKDTVVVNDRWC

Intron Amino Acid Position:

244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.1

74.8

41.3

Major BPS

54.4

0.11

61.4

34.3

Major PPT

83.7

0.76

0.7

77.1

31.7

Minor 5ss

39.2

-1.2

3.3

59.3

45.1

Minor BPS

46.3

-0.2

2.1

64.17

46.6

Associated Gene:

Gene:

FUCA1

Ensembl Gene ID:

ENSAPLG00000005504

Chromosome:

PEDO01012432.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031911

6321 - 14827

8507

ENSAPLT00000014032

6321 - 14827

8507

ENSAPLT00000005694

6321 - 12958

6638

ENSAPLT00000032804

6321 - 14827

8507