About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012432.1_9192_10031_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9192 - 10031
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTAGCTGAACT
Flanking Amino Acid:
RVQVEDTGTVWYTSKGPVVY
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.5
0.53
0.8
65.7
36
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
50.4
0.09
2
69.31
47.1

Associated Gene:

Gene:
FUCA1
Ensembl Gene ID:
ENSAPLG00000005504
Chromosome:
PEDO01012432.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031911
6321 - 14827
8507
ENSAPLT00000014032
6321 - 14827
8507
ENSAPLT00000005694
6321 - 12958
6638
ENSAPLT00000032804
6321 - 14827
8507