Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012462.1_10418_12047_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10418 - 12047

Intron Length:

1630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GCCGTGCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

ACCGGCTCACGG

Flanking Amino Acid:

CESRSSLEAAALLPYEPRVP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

77.2

32.8

Major BPS

52.1

0.05

1.3

41.8

Major PPT

60.8

0.24

0.9

49.8

39.4

Minor 5ss

32.6

-2

3.4

44.1

43.8

Minor BPS

32.4

-1.4

2.1

28.58

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020577

Chromosome:

PEDO01012462.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030756

10366 - 13642

3277