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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012462.1_14764_14850_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14764 - 14850
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
CCTCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAC
U12 Branch Point Sequence:
CCCACCCCACCA
Flanking Amino Acid:
NGPLPGPGPYKVKFLALNGT
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
0.9
71.4
32
Major BPS
46.4
-0.2
1.2
52.1
34.1
Major PPT
73.8
0.54
0.7
65
30.6
Minor 5ss
29.3
-2.4
3.4
40
39.8
Minor BPS
39.5
-0.8
2
44.52
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020577
Chromosome:
PEDO01012462.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023490
13230 - 15333
2104