Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012471.1_516_635_R

Intron Information:

Intron Rank:

141933

Intron Class:

major

Intron Phase:

Intron Coordinates:

516 - 635

Intron Length:

120

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGAGGC

5'SS Class:

major

3'SS Sequence:

TGTGCCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTCCAG

U12 Branch Point Sequence:

GTGCCCTCCAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

0.9

62.1

36.9

Major BPS

41.5

-0.5

1.6

49.7

Major PPT

0.43

0.9

58.8

38.3

Minor 5ss

25.5

-2.8

3.2

29.5

37.3

Minor BPS

43.1

-0.5

2.2

52.79

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023686

Chromosome:

PEDO01012471.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036460

21 - 1333

1313