Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012472.1_1906_1995_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1906 - 1995

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCCCAT

U12 Branch Point Sequence:

CCCATCCCATTT

Flanking Amino Acid:

PGLPGPPGMMGDVVNYDEIK

Intron Amino Acid Position:

252

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

68.8

42.2

Major BPS

63.5

0.33

1.2

72.5

34.6

Major PPT

70.6

0.46

0.7

61.4

29.1

Minor 5ss

32.2

-2

3.1

37.3

42.5

Minor BPS

36.7

-0.9

1.8

44.39

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019195

Chromosome:

PEDO01012472.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035759

21 - 4608

4588