Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012472.1_2617_2767_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2617 - 2767

Intron Length:

151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CTCCATCCCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTCCAT

U12 Branch Point Sequence:

CTCCCCACACCC

Flanking Amino Acid:

QPGPAGLAGVGLKGERGSAG

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.7

31.8

Major BPS

48.8

-0

1.5

60.4

45.8

Major PPT

67.1

0.38

0.8

Minor 5ss

31.7

-2.1

2.6

35.1

34.5

Minor BPS

42.7

-0.5

53.05

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019195

Chromosome:

PEDO01012472.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035759

21 - 4608

4588