Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012472.1_476_535_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

476 - 535

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGG|GCAGGGCGC

5'SS Class:

major

3'SS Sequence:

GGTGGTCCCGTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCTGCAG

U12 Branch Point Sequence:

CGGGGCTGCAGT

Flanking Amino Acid:

APRPPGGRGYRGC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.2

61.4

39.9

Major BPS

38.5

-0.7

1.7

47.8

Major PPT

58.8

0.2

0.9

51.1

39.3

Minor 5ss

18.9

-3.6

23.5

37.6

Minor BPS

34.2

-1.1

2.3

44.43

46.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025424

Chromosome:

PEDO01012472.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045145

467 - 4007

3541