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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012493.1_1488_1581_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1488 - 1581
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
CTCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCGTGCTGACCC
Flanking Amino Acid:
YLEREDSKIVDLFVGQLKSC
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
56.7
42.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
70.7
0.47
0.7
61.5
29
Minor 5ss
30.8
-2.2
3.2
30.6
42.7
Minor BPS
43.6
-0.5
2.1
50.23
46.5

Associated Gene:

Gene:
USP21
Ensembl Gene ID:
ENSAPLG00000023905
Chromosome:
PEDO01012493.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035626
20 - 2200
2181
ENSAPLT00000029520
110 - 2200
2091
ENSAPLT00000018550
110 - 2200
2091