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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012493.1_420_503_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
420 - 503
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
TCCCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
ATGCCCCCCATT
Flanking Amino Acid:
GPRAPQELTEAFADVIAALW
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
62.7
37.5
Major BPS
69.1
0.48
1
70
32.1
Major PPT
71.5
0.48
0.7
65.1
23.5
Minor 5ss
26.7
-2.7
3.2
26.6
36.8
Minor BPS
42.2
-0.5
2.1
60.96
42.8

Associated Gene:

Gene:
USP21
Ensembl Gene ID:
ENSAPLG00000023905
Chromosome:
PEDO01012493.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018550
110 - 2200
2091
ENSAPLT00000035626
20 - 2200
2181
ENSAPLT00000029520
110 - 2200
2091