About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012500.1_1701_2945_F


Intron Information:

Intron Rank:
135617

Intron Class:
major

Intron Phase:

Intron Coordinates:
1701 - 2945

Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GGG|GTCAGTACT

5'SS Class:
major

3'SS Sequence:
AACTATCATTTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTTTTTATCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.5
0.55
1.3
75.3
40.8

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
63.3
0.3
1
59.9
40.8

Minor 5ss
33.3
-1.9
2.6
36.6
39.8

Minor BPS
71.4
0.65
1.5
81.41
33.2

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
PEDO01012500.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1576 - 3380
1805