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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012503.1_5082_5453_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5082 - 5453
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCACCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CTCACCTGAGCT
Flanking Amino Acid:
NQRPQHFLKAMDPRSGRRKP
Intron Amino Acid Position:
1041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
68.7
0.42
0.8
61.7
28.8
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
51.7
0.13
1.8
69.65
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004787
Chromosome:
PEDO01012503.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004989
565 - 8257
7693