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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012503.1_6760_6870_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6760 - 6870
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGACT
5'SS Class:
major
3'SS Sequence:
CTGCCTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CGCTCCTGACCA
Flanking Amino Acid:
PDFRRNHSFHAINGYVRDTL
Intron Amino Acid Position:
1242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
73.9
36.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
73.2
0.52
0.8
65
36.3
Minor 5ss
29.6
-2.3
3.1
37.9
40.9
Minor BPS
51.1
0.03
1.8
60.68
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004787
Chromosome:
PEDO01012503.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004989
565 - 8257
7693