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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012503.1_860_996_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
860 - 996
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TGCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCCTGATGAAAT
Flanking Amino Acid:
PQFYASNMMHTVNGFVFDNL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
44.4
-0.3
2.2
63.14
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004787
Chromosome:
PEDO01012503.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004989
565 - 8257
7693