Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012517.1_3750_3911_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3750 - 3911

Intron Length:

162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCCG

5'SS Class:

major

3'SS Sequence:

GCCCCGTCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GGCGTGCCACGT

Flanking Amino Acid:

RLYWISEYKESIETLRVDGS

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

1.1

57.9

46.7

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

63.3

0.3

0.9

52.9

36.7

Minor 5ss

29.7

-2.3

3.4

38.8

46.5

Minor BPS

24.6

-1.8

2.1

33.06

36.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017607

Chromosome:

PEDO01012517.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019417

639 - 6005

5367

ENSAPLT00000035008

1414 - 6005

4592