Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01012517.1_5292_5365_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5292 - 5365

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGCAGG

5'SS Class:

major

3'SS Sequence:

TGCCTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

ATTTATTTCACC

Flanking Amino Acid:

LDGTDEPSTCGRSCFVRNGG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

46.2

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

76.3

0.59

0.8

69.7

31.1

Minor 5ss

33.8

-1.8

2.9

40.5

45.4

Minor BPS

58.3

0.24

1.9

73.53

37.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017607

Chromosome:

PEDO01012517.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019417

639 - 6005

5367